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Д«CFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants.

Д«BMap short read aligner, and other bioinformatic tools. ДЄutoDock Vina is an open-source program for doing molecular docking. ДЄNNOVAR is an efficient software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others). The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalized Born solvent models. ДЄmber is a package of programs for molecular dynamics simulations of proteins and nucleic acids.ДЄmberTools consists of several independently developed packages that work well by themselves, and with Amber. Alfred supports read counting, feature annotation and haplotype-resolved consensus computation using multiple sequence alignments.Alfred is available as a Bioconda package, you will have to load Anaconda3/2018.12 first before you can use it. Alfred is an efficient and versatile command-line application that computes multi-sample quality control metrics in a read-group aware manner. 'module spider BCFtools'.Д«AM Statistics, Feature Counting and Feature Annotation.

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To see if a specific package is available and which versions are installed, you will have to login ( how to login) and use 'module spider package-name' e.g. Please note that this list is not exhaustive. This is a list of bioinformatics software available at LUNARC.